CAFE

Package: CAFE
Type: Package
Title: Chromosmal Aberrations Finder in Expression data
Version: 1.8.0
Date: 2014-03-16
Author: Sander Bollen
Maintainer: Sander Bollen <sander.h.bollen@gmail.com>
Depends: R (>= 2.10), biovizBase, GenomicRanges, IRanges, ggbio
Imports: affy, ggplot2, annotate, grid, gridExtra, tcltk, Biobase
Suggests: RUnit, BiocGenerics, BiocStyle
Description: Detection and visualizations of gross chromosomal
aberrations using Affymetrix expression microarrays as input
License: GPL-3
ByteCompile: true
biocViews: GeneExpression, Microarray, OneChannel, GeneSetEnrichment
Collate: microProcess-improve.R selectSamples.R chromosomeStats.R
rawPlot.R slidPlot.R discontPlot.R facetPlot.R
NeedsCompilation: no
Packaged: 2016-05-04 05:21:43 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'CAFE' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'ggbio'
Warning: S3 methods 'as.character.tclObj', 'as.character.tclVar', 'as.double.tclObj', 'as.integer.tclObj', 'as.logical.tclObj', 'as.raw.tclObj', 'print.tclObj', '[[.tclArray', '[[<-.tclArray', '$.tclArray', '$<-.tclArray', 'names.tclArray', 'names<-.tclArray', 'length.tclArray', 'length<-.tclArray', 'tclObj.tclVar', 'tclObj<-.tclVar', 'tclvalue.default', 'tclvalue.tclObj', 'tclvalue.tclVar', 'tclvalue<-.default', 'tclvalue<-.tclVar', 'close.tkProgressBar' were declared in NAMESPACE but not found
Error : .onLoad failed in loadNamespace() for 'tcltk', details:
  call: fun(libname, pkgname)
  error: Tcl/Tk support is not available on this system
ERROR: lazy loading failed for package 'CAFE'
* removing '/home/ddbj/local/lib64/R/library/CAFE'