MMDiff

Package: MMDiff
Type: Package
Title: Statistical Testing for ChIP-Seq data sets
Version: 1.12.0
Date: 2016-04-26
Author: Gabriele Schweikert
Maintainer: Gabriele Schweikert <G.Schweikert@ed.ac.uk>
Description: This package detects statistically significant difference
between read enrichment profiles in different ChIP-Seq samples.
To take advantage of shape differences it uses Kernel methods
(Maximum Mean Discrepancy, MMD).
WARNING: This package is deprecated, please use MMDiff2 instead.
License: Artistic-2.0
Imports: IRanges, Biobase
Depends: R (>= 2.14.0), GenomicRanges, parallel, DiffBind, GMD, Rsamtools
Suggests: MMDiffBamSubset
biocViews: ChIPSeq, MultipleComparison
PackageStatus: Deprecated
NeedsCompilation: no
Packaged: 2016-05-04 04:57:16 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'MMDiff' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'MMDiff'
    finding HTML links ... done
    Cfp1Dists                               html  
Rd warning: /tmp/RtmpZ6dCQv/R.INSTALL789358967811/MMDiff/man/Cfp1Dists.Rd:49: missing file link 'summary.DBA'
    Cfp1Profiles                            html  
Rd warning: /tmp/RtmpZ6dCQv/R.INSTALL789358967811/MMDiff/man/Cfp1Profiles.Rd:42: missing file link 'summary.DBA'
    MMDiff-package                          html  
    compHistDists                           html  
    detPeakPvals                            html  
    findOutliers                            html  
    getNormFactors                          html  
    getPeakProfiles                         html  
Rd warning: /tmp/RtmpZ6dCQv/R.INSTALL789358967811/MMDiff/man/getPeakProfiles.Rd:100: missing file link 'summary.DBA'
Rd warning: /tmp/RtmpZ6dCQv/R.INSTALL789358967811/MMDiff/man/getPeakProfiles.Rd:101: missing file link 'GRanges'
    plotHistDists                           html  
    plotPeak                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: Package 'MMDiff' is deprecated and will be removed from Bioconductor
  version 3.4
* DONE (MMDiff)
Making 'packages.html' ... done