acde

Package: acde
Type: Package
Title: Artificial Components Detection of Differentially Expressed
Genes
Version: 1.2.0
Date: 2015-02-25
Author: Juan Pablo Acosta, Liliana Lopez-Kleine
Maintainer: Juan Pablo Acosta <jpacostar@unal.edu.co>
Description: This package provides a multivariate inferential analysis
method for detecting differentially expressed genes in gene
expression data. It uses artificial components, close to the
data's principal components but with an exact interpretation in
terms of differential genetic expression, to identify
differentially expressed genes while controlling the false
discovery rate (FDR). The methods on this package are described
in the vignette or in the article 'Multivariate Method for
Inferential Identification of Differentially Expressed Genes in
Gene Expression Experiments' by J. P. Acosta, L. Lopez-Kleine
and S. Restrepo (2015, pending publication).
License: GPL-3
LazyData: yes
Depends: R (>= 3.2), boot (>= 1.3)
Suggests: BiocGenerics, RUnit
Encoding: UTF-8
biocViews: DifferentialExpression, TimeCourse, PrincipalComponent,
GeneExpression, Microarray, mRNAMicroarray
NeedsCompilation: no
Packaged: 2016-05-04 06:19:57 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'acde' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'acde'
    finding HTML links ... done
    ac                                      html  
    acde-package                            html  
    bcaFDR                                  html  
    fdr                                     html  
    phytophthora                            html  
    plot.STP                                html  
    plot.TC                                 html  
    print.STP                               html  
    print.TC                                html  
    qval                                    html  
    stp                                     html  
    tc                                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (acde)
Making 'packages.html' ... done