adSplit

Package: adSplit
Title: Annotation-Driven Clustering
Version: 1.42.0
Date: 2010-04-21
Author: Claudio Lottaz, Joern Toedling
Description: This package implements clustering of microarray gene
expression profiles according to functional annotations. For
each term genes are annotated to, splits into two subclasses
are computed and a significance of the supporting gene set is
determined.
Maintainer: Claudio Lottaz <Claudio.Lottaz@klinik.uni-regensburg.de>
Depends: R (>= 2.1.0), methods (>= 2.1.0)
Imports: AnnotationDbi, Biobase (>= 1.5.12), cluster (>= 1.9.1), GO.db
(>= 1.8.1), graphics, grDevices, KEGG.db (>= 1.8.1), methods,
multtest (>= 1.6.0), stats (>= 2.1.0)
Suggests: golubEsets (>= 1.0), vsn (>= 1.5.0), hu6800.db (>= 1.8.1)
LazyLoad: yes
URL: http://compdiag.molgen.mpg.de/software/index.shtml
License: GPL (>= 2)
biocViews: Microarray, Clustering
NeedsCompilation: yes
Packaged: 2016-05-04 02:51:52 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'adSplit' ...
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c adSplit.cpp -o adSplit.o
adSplit.cpp: In function 'double tscore(double*, int, int, split&, isis_pars&)':
adSplit.cpp:256:77: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
     throw Tomato(__LINE__, "tscore: internal error, shame on the programmer");
                                                                             ^
adSplit.cpp: In function 'void isis(char**, double*, int*, int*, int*, int*, int*, double*, int*)':
adSplit.cpp:469:67: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
       throw Tomato(__LINE__, "isis() called with unknown function");
                                                                   ^
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o adSplit.so adSplit.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/adSplit/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'adSplit'
    finding HTML links ... done
    adSplit-internal                        html  
    adSplit                                 html  
    diana2means                             html  
    drawRandomPS                            html  
    golubKEGGSplits                         html  
    hist.splitSet                           html  
    image.splitSet                          html  
    makeEID2PROBESenv                       html  
    print.split                             html  
    print.splitSet                          html  
    randomDiana2means                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (adSplit)
Making 'packages.html' ... done