chipseq

Package: chipseq
Title: chipseq: A package for analyzing chipseq data
Version: 1.22.0
Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao
Description: Tools for helping process short read data for chipseq
experiments
Depends: R (>= 2.10), methods, BiocGenerics (>= 0.1.0), S4Vectors (>=
0.9.25), IRanges (>= 1.99.1), GenomicRanges (>= 1.17.7),
ShortRead
Imports: methods, stats, lattice, BiocGenerics, IRanges, GenomicRanges,
ShortRead
Suggests: BSgenome, GenomicFeatures, TxDb.Mmusculus.UCSC.mm9.knownGene
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
License: Artistic-2.0
LazyLoad: yes
biocViews: ChIPSeq, Sequencing, Coverage, QualityControl, DataImport
NeedsCompilation: yes
Packaged: 2016-05-04 03:17:00 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'chipseq' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rlesumprod.c -o rlesumprod.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o chipseq.so rlesumprod.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/chipseq/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'chipseq'
    finding HTML links ... done
    chipseqFilter                           html  
    coverageplot                            html  
    cstest                                  html  
    diffPeakSummary                         html  
    estimate.mean.fraglen                   html  
Rd warning: /tmp/RtmpY6uu29/R.INSTALL7a6829112ad1/chipseq/man/estimate.mean.fraglen.Rd:56: missing file link 'IntegerList-class'
    islandDepthPlot                         html  
Rd warning: /tmp/RtmpY6uu29/R.INSTALL7a6829112ad1/chipseq/man/islandDepthPlot.Rd:17: missing file link 'RleList-class'
    laneSubsample                           html  
    peakCutoff                              html  
Rd warning: /tmp/RtmpY6uu29/R.INSTALL7a6829112ad1/chipseq/man/peakCutoff.Rd:17: missing file link 'RleList-class'
    peakSummary-methods                     html  
    subsetSummary                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (chipseq)
Making 'packages.html' ... done