genefilter

Package: genefilter
Title: genefilter: methods for filtering genes from high-throughput
experiments
Version: 1.54.2
Author: R. Gentleman, V. Carey, W. Huber, F. Hahne
Description: Some basic functions for filtering genes
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
Suggests: class, hgu95av2.db, tkWidgets, ALL, ROC, DESeq, pasilla,
BiocStyle, knitr
Imports: S4Vectors (>= 0.9.42), AnnotationDbi, annotate, Biobase,
graphics, methods, stats, survival
License: Artistic-2.0
LazyLoad: yes
LazyData: yes
Collate: AllClasses.R AllGenerics.R all.R dist2.R eSetFilter.R fastT.R
filter_volcano.R filtered_p.R genefinder.R half.range.mode.R
kappa_p.R nsFilter.R rejection_plot.R rowROC-accessors.R
rowSds.R rowpAUCs-methods.R rowttests-methods.R shorth.R zzz.R
biocViews: Microarray
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-05-16 01:27:46 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'genefilter' ...
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c half_range_mode.cpp -o half_range_mode.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c init.c -o init.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c nd.c -o nd.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c pAUC.c -o pAUC.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rowPAUCs.c -o rowPAUCs.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rowttests.c -o rowttests.o
f95   -fpic  -g -O2  -c ttest.f -o ttest.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o genefilter.so half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/genefilter/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'genefilter'
** help
*** installing help indices
  converting help for package 'genefilter'
    finding HTML links ... done
    Anova                                   html  
    coxfilter                               html  
    cv                                      html  
    dist2                                   html  
    eSetFilter                              html  
    filter_volcano                          html  
    filtered_p                              html  
    filterfun                               html  
    findLargest                             html  
    gapFilter                               html  
    genefilter                              html  
    genefinder                              html  
    genescale                               html  
    half.range.mode                         html  
    kOverA                                  html  
    kappa_p                                 html  
    maxA                                    html  
    nsFilter                                html  
    pOverA                                  html  
    rejection_plot                          html  
    rowFtests                               html  
    rowROC-class                            html  
    rowSds                                  html  
    rowpAUCs                                html  
    shorth                                  html  
    tdata                                   html  
    ttest                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (genefilter)
Making 'packages.html' ... done