Last data update: 2014.03.03
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netresponse
Package: netresponse
Type: Package
Title: Functional Network Analysis
Version: 1.32.2
Date: 2016-04-05
Author: Leo Lahti, Olli-Pekka Huovilainen, Antonio Gusmao and Juuso Parkkinen
Maintainer: Leo Lahti <leo.lahti@iki.fi>
Description: Algorithms for functional network analysis. Includes an
implementation of a variational Dirichlet process Gaussian
mixture model for nonparametric mixture modeling.
License: GPL (>=2)
Depends: R (>= 2.15.1), Rgraphviz, methods, minet, mclust, reshape2
Imports: dmt, ggplot2, graph, igraph, parallel, plyr, qvalue,
RColorBrewer
URL: https://github.com/antagomir/netresponse
BugReports: https://github.com/antagomir/netresponse/issues
biocViews: CellBiology, Clustering, GeneExpression, Genetics, Network,
GraphAndNetwork, DifferentialExpression, Microarray,
Transcription
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-05-16 02:34:25 UTC; biocbuild
● BiocViews: CellBiology, Clustering, DifferentialExpression, GeneExpression, Genetics, GraphAndNetwork, Microarray, Network, Transcription
●
1 images,
73 functions,
2 datasets
●
Reverse Depends: 0
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'netresponse' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c netresponse.c -o netresponse.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o netresponse.so netresponse.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/netresponse/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'netresponse'
finding HTML links ... done
ICMg.combined.sampler html
ICMg.get.comp.memberships html
ICMg.links.sampler html
NetResponseModel-class html
P.S html
P.Sr html
P.r.s html
P.rS html
P.rs.joint html
P.rs.joint.individual html
P.s.individual html
P.s.r html
PlotMixture html
PlotMixtureBivariate html
PlotMixtureMultivariate html
PlotMixtureMultivariate.deprecated html
PlotMixtureUnivariate html
add.ellipse html
bic.mixture html
bic.mixture.multivariate html
bic.mixture.univariate html
bic.select.best.mode html
centerData html
check.matrix html
check.network html
continuous.responses html
detect.responses html
dna html
enrichment.list.factor html
enrichment.list.factor.minimal html
factor.responses html
factor.responses.minimal html
filter.netw html
filter.network html
find.similar.features html
generate.toydata html
get.dat-NetResponseModel-method html
get.mis html
get.model.parameters html
get.subnets-NetResponseModel-method html
getqofz-NetResponseModel-method html
independent.models html
list.responses.continuous.multi html
list.responses.continuous.single html
list.responses.factor html
list.responses.factor.minimal html
list.significant.responses html
listify.groupings html
mixture.model html
model.stats html
netresponse-package html
order.responses html
osmo html
pick.model.pairs html
pick.model.parameters html
plotPCA html
plot_associations html
plot_data html
plot_expression html
plot_matrix html
plot_response html
plot_responses html
plot_scale html
plot_subnet html
read.sif html
remove.negative.edges html
response.enrichment html
response2sample html
sample2response html
set.breaks html
toydata html
update.model.pair html
vdp.mixt html
vectorize.groupings html
write.netresponse.results html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (netresponse)
Making 'packages.html' ... done
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