networkBMA

Package: networkBMA
Version: 1.14.0
Date: 2014--04--02
Author: Chris Fraley, Wm. Chad Young, Ka Yee Yeung, Adrian Raftery
(with contributions from Kenneth Lo)
Title: Regression-based network inference using Bayesian Model
Averaging
Description: An extension of Bayesian Model Averaging (BMA) for network
construction using time series gene expression data.
Includes assessment functions and sample test data.
Depends: R (>= 2.15.0), stats, utils, BMA, Rcpp (>= 0.10.3),
RcppArmadillo (>= 0.3.810.2), RcppEigen (>= 0.3.1.2.1)
LinkingTo: Rcpp, RcppArmadillo, RcppEigen
License: GPL (>= 2)
Maintainer: Ka Yee Yeung <kayee@u.washington.edu>
biocViews: GraphsAndNetwork, NetworkInference, GeneExpression,
GeneTarget, Network, Bayesian
Packaged: 2016-05-04 04:39:15 UTC; biocbuild
NeedsCompilation: yes

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'networkBMA' ...
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking unordered_set usability... no
checking unordered_set presence... no
checking for unordered_set... no
checking tr1/unordered_set usability... yes
checking tr1/unordered_set presence... yes
checking for tr1/unordered_set... yes
configure: creating ./config.status
config.status: creating src/config.h
config.status: src/config.h is unchanged
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c ScanBMA_full.cpp -o ScanBMA_full.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o networkBMA.so RcppExports.o ScanBMA_full.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/networkBMA/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'networkBMA'
    finding HTML links ... done
    ScanBMA                                 html  
    ScanBMAcontrol                          html  
    contabs                                 html  
    contabs.netwBMA                         html  
    contabs.prelim                          html  
    dream4                                  html  
    gControl                                html  
    iBMAcontrolLM                           html  
    iterateBMAlm                            html  
    finding level-2 HTML links ... done

    networkBMA-internal                     html  
    networkBMA                              html  
    roc                                     html  
    scores                                  html  
    summary.networkBMA                      html  
    varord                                  html  
    vignette                                html  
    writeEdges                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (networkBMA)
Making 'packages.html' ... done