nucleR

Package: nucleR
Type: Package
Title: Nucleosome positioning package for R
Version: 2.4.0
Date: 2016-02-24
Author: Oscar Flores, Ricard Illa
Maintainer: Ricard Illa <ricard.illa@irbbarcelona.org>
Description: Nucleosome positioning for Tiling Arrays and NGS experiments.
License: LGPL (>= 3)
Depends: ShortRead
Imports: methods, BiocGenerics, S4Vectors (>= 0.9.39), IRanges (>=
2.5.27), Biobase, GenomicRanges (>= 1.23.16), Rsamtools, stats,
graphics, parallel
Suggests: Starr
LazyLoad: yes
biocViews: ChIPSeq, Microarray, Sequencing, Genetics
NeedsCompilation: no
Packaged: 2016-05-04 04:09:14 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'nucleR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'nucleR'
    finding HTML links ... done
    controlCorrection                       html  
    coverage.rpm                            html  
    finding level-2 HTML links ... done

    export.bed                              html  
    export.wig                              html  
    filterFFT                               html  
    fragmentLenDetect                       html  
    mergeCalls                              html  
    nucleR-package                          html  
    nucleosome_htseq                        html  
    nucleosome_tiling                       html  
    pcKeepCompDetect                        html  
    peakDetection                           html  
    peakScoring                             html  
    plotPeaks                               html  
    processReads                            html  
    processTilingArray                      html  
Rd warning: /tmp/RtmppAHDWS/R.INSTALLcf3411848c9/nucleR/man/processTilingArray.Rd:99: missing file link 'ExpressionSet'
    readBAM                                 html  
    syntheticNucMap                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (nucleR)
Making 'packages.html' ... done