nucleoSim

Package: nucleoSim
Version: 1.0.2
Date: 2015-07-24
Title: Generate synthetic nucleosome maps
Description: This package can generate a synthetic map with reads
covering the nucleosome regions as well as a synthetic map with
forward and reverse reads emulating next-generation sequencing.
The user has choice between three different distributions for
the read positioning: Normal, Student and Uniform.
Encoding: UTF-8
Author: Rawane Samb [aut], Astrid Deschênes [cre, aut], Pascal Belleau
[aut], Arnaud Droit [aut]
Author@R: c(person("Rawane", "Samb", email="rawane.samb.1@ulaval.ca",
role=c("aut")), person("Astrid", "Deschênes",
email="Astrid-Louise.Deschenes@crchudequebec.ulaval.ca",
role=c("cre","aut")), person("Pascal", "Belleau",
email="pascal.belleau@crchuq.ulaval.ca", role=c("aut")),
person("Arnaud", "Droit",
email="arnaud.droit@crchuq.ulaval.ca", role=c("aut")))
Imports: stats, IRanges, S4Vectors, graphics
Suggests: BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit
License: Artistic-2.0
URL: https://github.com/arnauddroitlab/nucleoSim
BugReports: https://github.com/arnauddroitlab/nucleoSim/issues
VignetteBuilder: knitr
NeedsCompilation: no
biocViews: Genetics, Sequencing, Software, StatisticalMethod, Alignment
Maintainer: Astrid Deschenes
<Astrid-Louise.Deschenes@crchudequebec.ulaval.ca>
RoxygenNote: 5.0.1
Packaged: 2016-05-16 06:01:14 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'nucleoSim' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'nucleoSim'
    finding HTML links ... done
    createNucReadsFromNucMap                html  
    nucleoSim-package                       html  
    plot.syntheticNucMap                    html  
    plot.syntheticNucReads                  html  
    syntheticNucMapFromDist                 html  
    syntheticNucMapFromDistValidation       html  
    syntheticNucReadsFromDist               html  
    syntheticNucReadsFromMap                html  
    syntheticNucReadsValidation             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (nucleoSim)
Making 'packages.html' ... done