plrs

Package: plrs
Version: 1.12.0
Type: Package
Title: Piecewise Linear Regression Splines (PLRS) for the association
between DNA copy number and gene expression
Author: Gwenael G.R. Leday
Maintainer: Gwenael G.R. Leday to <gleday@few.vu.nl>
Depends: R (>= 2.10), Biobase
Imports: BiocGenerics, CGHbase, graphics, grDevices, ic.infer, marray,
methods, quadprog, Rcsdp, stats, stats4, utils
Suggests: mvtnorm, methods
Description: The present package implements a flexible framework for
modeling the relationship between DNA copy number and gene
expression data using Piecewise Linear Regression Splines
(PLRS).
License: GPL (>=2.0)
biocViews: Regression
NeedsCompilation: no
Packaged: 2016-05-04 04:47:24 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'plrs' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'model.matrix' from package 'stats' in package 'plrs'
Creating a generic function for 'knots' from package 'stats' in package 'plrs'
Creating a generic function for 'print' from package 'base' in package 'plrs'
Creating a generic function for 'effects' from package 'stats' in package 'plrs'
** help
*** installing help indices
  converting help for package 'plrs'
    finding HTML links ... done
    criteria                                html  
    modify.conf                             html  
    neveCN17                                html  
Rd warning: /tmp/RtmpRXjw9h/R.INSTALL22f135e31df8/plrs/man/neveCN17.Rd:15: missing file link 'cghCall'
    neveGE17                                html  
Rd warning: /tmp/RtmpRXjw9h/R.INSTALL22f135e31df8/plrs/man/neveGE17.Rd:15: missing file link 'ExpressionSet'
    plot-methods                            html  
    plrs-class                              html  
    plrs-package                            html  
    plrs                                    html  
    plrs.cb                                 html  
    plrs.select-class                       html  
    plrs.select                             html  
    plrs.series-class                       html  
    plrs.series                             html  
Rd warning: /tmp/RtmpRXjw9h/R.INSTALL22f135e31df8/plrs/man/plrs.series.Rd:32: missing file link 'ExpressionSet'
Rd warning: /tmp/RtmpRXjw9h/R.INSTALL22f135e31df8/plrs/man/plrs.series.Rd:33: missing file link 'cghSeg'
Rd warning: /tmp/RtmpRXjw9h/R.INSTALL22f135e31df8/plrs/man/plrs.series.Rd:33: missing file link 'cghCall'
Rd warning: /tmp/RtmpRXjw9h/R.INSTALL22f135e31df8/plrs/man/plrs.series.Rd:47: missing file link 'ExpressionSet'
Rd warning: /tmp/RtmpRXjw9h/R.INSTALL22f135e31df8/plrs/man/plrs.series.Rd:48: missing file link 'cghSeg'
Rd warning: /tmp/RtmpRXjw9h/R.INSTALL22f135e31df8/plrs/man/plrs.series.Rd:48: missing file link 'cghCall'
Rd warning: /tmp/RtmpRXjw9h/R.INSTALL22f135e31df8/plrs/man/plrs.series.Rd:50: missing file link 'cghSeg'
    plrs.sim                                html  
    plrs.test                               html  
    predict.plrs                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (plrs)
Making 'packages.html' ... done