proteoQC

Package: proteoQC
Type: Package
Title: An R package for proteomics data quality control
Version: 1.8.2
Author: Bo Wen <wenbo@genomics.cn>, Laurent Gatto <lg390@cam.ac.uk>
Maintainer: Bo Wen <wenbo@genomics.cn>
Description: This package creates a HTML format QC report for MS/MS-based
proteomics data. The report is intended to allow the user to quickly assess
the quality of proteomics data.
Depends: R (>= 3.0.0), XML, VennDiagram, MSnbase
Imports: rTANDEM, plyr, seqinr, Nozzle.R1, ggplot2, reshape2, parallel,
Rcpp (>= 0.11.1)
LinkingTo: Rcpp
License: LGPL-2
Suggests: RforProteomics, knitr, BiocStyle, rpx, R.utils,
RUnit, BiocGenerics
VignetteBuilder: knitr
biocViews: Proteomics, MassSpectrometry, QualityControl, Visualization,
ReportWriting
NeedsCompilation: yes
Packaged: 2016-05-16 04:34:10 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'proteoQC' ...
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c utilities.cpp -o utilities.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o proteoQC.so utilities.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/proteoQC/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'proteoQC'
    finding HTML links ... done
    addSummaryChart                         html  
    calcMSQCMetrics                         html  
    chargeStat                              html  
    cntStat                                 html  
    combineRun                              html  
    createTargetDecoyDB                     html  
    getEnzyme                               html  
    getMods                                 html  
    labelRatio                              html  
    loadmsQCres                             html  
    msQCpipe                                html  
    plotBioRepVenn                          html  
    plotFractionIDResult                    html  
    plotMS1Error                            html  
    plotMS2Error                            html  
    plotMS2Error_obsolete                   html  
    plotSampleIDResultErrorBar              html  
    plotSampleVenn                          html  
    plotTechRepVenn                         html  
    print.msQCres                           html  
    proteinGroup                            html  
    reportHTML                              html  
    runTandem                               html  
    showEnzyme                              html  
    showMods                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (proteoQC)
Making 'packages.html' ... done