psygenet2r

Package: psygenet2r
Title: psygenet2r - An R package for querying PsyGeNET and to perform
comorbidity studies in psychiatric disorders
Version: 1.2.0
Authors@R: c(person("Alba", "Gutierrez-Sacristan", "alba.gutierrez@upf.edu", role = c("aut", "cre")),
person("Carles", "Hernandez-Ferrer", "chernandez@creal.cat", role = "aut"))
Description: Package to retrieve data from PsyGeNET database (www.psygenet.org) and to perform comorbidity studies with PsyGeNET's and user's data.
Depends: R (>= 3.2), VennDiagram
License: MIT + file LICENSE
LazyData: true
Suggests: testthat
Imports: stringr, RCurl, igraph, bvenn, ggplot2, reshape2, grid,
parallel, biomaRt
NeedsCompilation: no
Packaged: 2016-05-05 05:53:05 UTC; biocbuild
Author: Alba Gutierrez-Sacristan [aut],
Carles Hernandez-Ferrer [cre]
Maintainer: Alba Gutierrez-Sacristan <alba.gutierrez@upf.edu>
biocViews: Software, BiomedicalInformatics, Genetics, Infrastructure,
DataImport, DataRepresentation
RoxygenNote: 5.0.1

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'psygenet2r' ...
It is recommended to use 'given' instead of 'middle'.
It is recommended to use 'given' instead of 'middle'.
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'psygenet2r'
** help
*** installing help indices
  converting help for package 'psygenet2r'
    finding HTML links ... done
    DataGeNET.Psy-class                     html  
    JaccardIndexPsy-class                   html  
    enrichedPD-methods                      html  
    extract                                 html  
    extractSentences                        html  
    getUMLs-methods                         html  
    jaccardEstimation-methods               html  
    ndisease                                html  
    ngene                                   html  
    pantherGraphic-methods                  html  
    plot-DataGeNET.Psy-ANY-method           html  
    plot-JaccardIndexPsy-ANY-method         html  
    psygenet2r                              html  
    psygenetDisease-methods                 html  
    psygenetDiseaseSentences                html  
    psygenetGene-methods                    html  
    psygenetGeneSentences                   html  
    qr                                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (psygenet2r)
Making 'packages.html' ... done