DEXSeq : Inference of differential exon usage in RNA-Seq

Package: DEXSeq
Version: 1.18.4
Title: Inference of differential exon usage in RNA-Seq
Author: Simon Anders <sanders@fs.tum.de> and Alejandro Reyes
<alejandro.reyes@embl.de>
Maintainer: Alejandro Reyes <alejandro.reyes@embl.de>
Imports: BiocGenerics, biomaRt, hwriter, methods, stringr, Rsamtools,
statmod, geneplotter, genefilter
Depends: BiocParallel, Biobase, SummarizedExperiment, IRanges (>=
2.5.17), GenomicRanges (>= 1.23.7), DESeq2 (>= 1.9.11),
AnnotationDbi, RColorBrewer, S4Vectors
Suggests: GenomicFeatures (>= 1.13.29), pasilla (>= 0.2.22),
parathyroidSE, BiocStyle, knitr
Enhances:
Description: The package is focused on finding differential exon usage
using RNA-seq exon counts between samples with different
experimental designs. It provides functions that allows the
user to make the necessary statistical tests based on a model
that uses the negative binomial distribution to estimate the
variance between biological replicates and generalized linear
models for testing. The package also provides functions for the
visualization and exploration of the results.
License: GPL (>= 3)
URL:
biocViews: Sequencing, RNASeq, DifferentialExpression
Packaged: 2016-05-19 02:54:44 UTC; biocbuild
VignetteBuilder: knitr
NeedsCompilation: no