DMRcate : Methylation array and sequencing spatial analysis methods

Package: DMRcate
Title: Methylation array and sequencing spatial analysis methods
Version: 1.8.5
Date: 2016-24-05
Author: Tim Peters
Maintainer: Tim Peters <t.peters@garvan.org.au>
Authors@R: c(person("Tim", "Peters", role = c("cre", "aut"),
email = "t.peters@garvan.org.au"),
person("Mike", "Buckley", role = "aut"),
person("Aaron", "Statham", role = "ctb"),
person("Tim", "Triche, Jr.", role = "ctb"))
Description: De novo identification and extraction of differentially methylated regions (DMRs) from the human genome using Whole Genome Bisulphite Sequencing (WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes GRanges generation and plotting functions.
Depends: R (>= 3.3.0), minfi, DSS, DMRcatedata
Imports: limma, GenomicRanges, parallel, methods, graphics, plyr, Gviz,
IRanges, stats, utils, S4Vectors
biocViews: DifferentialMethylation, GeneExpression, Microarray,
MethylationArray, Genetics, DifferentialExpression,
GenomeAnnotation, DNAMethylation, OneChannel, TwoChannel,
MultipleComparison, QualityControl, TimeCourse
Suggests: knitr, RUnit, BiocGenerics,
IlluminaHumanMethylation450kanno.ilmn12.hg19,
IlluminaHumanMethylationEPICanno.ilm10b2.hg19
License: file LICENSE
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-05-25 04:23:05 UTC; biocbuild