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Package: pcaMethods
Maintainer: Henning Redestig <henning.red@gmail.com>
License: GPL (>= 3)
Title: A collection of PCA methods
LinkingTo: Rcpp
LazyLoad: Yes
Author: Wolfram Stacklies, Henning Redestig, Kevin Wright
SystemRequirements: Rcpp
Description: Provides Bayesian PCA, Probabilistic PCA, Nipals PCA,
Inverse Non-Linear PCA and the conventional SVD PCA. A cluster
based method for missing value estimation is included for
comparison. BPCA, PPCA and NipalsPCA may be used to perform PCA
on incomplete data as well as for accurate missing value
estimation. A set of methods for printing and plotting the
results is also provided. All PCA methods make use of the same
data structure (pcaRes) to provide a common interface to the
PCA results. Initiated at the Max-Planck Institute for
Molecular Plant Physiology, Golm, Germany.
Version: 1.64.0
URL: https://github.com/hredestig/pcamethods
BugReports: https://github.com/hredestig/pcamethods/issues
Depends: Biobase, methods
Imports: BiocGenerics, Rcpp (>= 0.11.3), MASS
Suggests: matrixStats, lattice, ggplot2
Collate: 'derrorHierarchic.R' 'errorHierarchic.R' 'AllClasses.R'
'AllGenerics.R' 'BPCA_dostep.R' 'BPCA_initmodel.R' 'bpca.R'
'checkData.R' 'forkNlpcaNet.R' 'kEstimate.R' 'kEstimateFast.R'
'lineSearch.R' 'llsImpute.R' 'methods-ExpressionSet.R'
'methods-nniRes.R' 'methods-pcaRes.R' 'nipalsPca.R' 'nlpca.R'
'optiAlgCgd.R' 'orth.R' 'pca.R' 'pcaMethods-package.R' 'ppca.R'
'prep.R' 'repmat.R' 'robustPca.R' 'sortFeatures.R'
'svdImpute.R' 'vector2matrices.R' 'xval.R'
Packaged: 2016-05-04 02:56:16 UTC; biocbuild
biocViews: Bayesian
RoxygenNote: 5.0.1
NeedsCompilation: yes
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providing 
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