Plot a vector of R2

Description

Plot a vector of R2 where the first value is the main variable and the last one, if named covariates is treated as covariates.

Usage

plotLM(Rsquares, title = paste("Variance Explained in", feat_name),
  feat_name = NULL, variable_name = names(Rsquares)[1], max_columns = 6)

Arguments

Value

A plot in the graphical device

Examples

data(mtcars)
R2 <- explainedVariance(mtcars, variable_label = "cyl") ## variable equals to cyl column
plotLM(R2)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(MEAL)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: MultiDataSet
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/MEAL/plotLM.Rd_%03d_medium.png", width=480, height=480)
> ### Name: plotLM
> ### Title: Plot a vector of R2
> ### Aliases: plotLM
> 
> ### ** Examples
> 
> data(mtcars)
> R2 <- explainedVariance(mtcars, variable_label = "cyl") ## variable equals to cyl column
> plotLM(R2)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>