Distribution of intensities of the border elements

Description

Creates the forth page of the QC report created by QCReport for an object of class AffyBatch The page contains a boxplots showing the intensities from the border element of arrays in an AffyBatch object.

Usage

borderQC1(object)

Arguments

Details

This creates the forth page of a QCReport report. Boxplots of the positive and negative border elements of arrays in a AffyBatch object are shown.

More details are available in the vignette.

Value

TRUE

Examples

    
    library(affydata)
    data(Dilution)

   borderQC1(Dilution)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(affyQCReport)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: affy
Loading required package: lattice
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/affyQCReport/borderQC1.Rd_%03d_medium.png", width=480, height=480)
> ### Name: borderQC1
> ### Title: Distribution of intensities of the border elements
> ### Aliases: borderQC1
> ### Keywords: hplot
> 
> ### ** Examples
> 
>     
>     library(affydata)
     Package    LibPath                            Item      
[1,] "affydata" "/home/ddbj/local/lib64/R/library" "Dilution"
     Title                        
[1,] "AffyBatch instance Dilution"
>     data(Dilution)
> 
>    borderQC1(Dilution)
[1] TRUE
> 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>