Intensity distribution plots for a AffyBatch object

Description

Creates the secondpage of the QC report created by QCReport for an object of class AffyBatch The page contains a boxplot and intensity distribution plots.

Usage

signalDist(object)

Arguments

Details

This creates the second page of a QCReport report. The first graph is created with the AffyBatch method boxplot. The second graph in created with the AffyBatch method hist.

More details are available in the vignette.

Value

TRUE

Examples

    
    library(affydata)
    data(Dilution)

   signalDist(Dilution)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(affyQCReport)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: affy
Loading required package: lattice
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/affyQCReport/signalDist.Rd_%03d_medium.png", width=480, height=480)
> ### Name: signalDist
> ### Title: Intensity distribution plots for a AffyBatch object
> ### Aliases: signalDist QCReport-signalDist
> ### Keywords: hplot
> 
> ### ** Examples
> 
>     
>     library(affydata)
     Package    LibPath                            Item      
[1,] "affydata" "/home/ddbj/local/lib64/R/library" "Dilution"
     Title                        
[1,] "AffyBatch instance Dilution"
>     data(Dilution)
> 
>    signalDist(Dilution)

Warning messages:
1: replacing previous import 'AnnotationDbi::tail' by 'utils::tail' when loading 'hgu95av2cdf' 
2: replacing previous import 'AnnotationDbi::head' by 'utils::head' when loading 'hgu95av2cdf' 
> 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>