gutterPlot

Description

A Quality Control plot to check the number of events in each channel that are at either their minimum or maximum value. A large number of these events may indicate a problem with the sample.

Usage

gutterPlot(fp, chans = c("FSC-H", "SSC-H", "FL1-H", "FL2-H", "FL3-H", "FL4-H"), ...)

Arguments

Value

Creates a plot where the x-axis is the different wells in a flowPlate, and the y-axis is the fraction of events at the boundary.

Author(s)

Jon Gosink and Errol Strain

Examples

library(plateCore)
data(plateCore)

## Create a flowPlate
fp <- flowPlate(pbmcPlate,wellAnnotation,"p1001")

gutterPlot(fp,chans=c("FSC-H","SSC-H","FL1-H","FL2-H","FL3-H","FL4-H"))

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(plateCore)
Loading required package: flowCore
Loading required package: flowViz
Loading required package: lattice
Loading required package: latticeExtra
Loading required package: RColorBrewer

Attaching package: 'latticeExtra'

The following object is masked from 'package:flowViz':

    ecdfplot

sROC 0.1-2 loaded
No methods found in "flowStats" for requests: %on%
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/plateCore/gutterPlot-methods.Rd_%03d_medium.png", width=480, height=480)
> ### Name: gutterPlot
> ### Title: gutterPlot
> ### Aliases: gutterPlot gutterPlot-method gutterPlot,flowPlate-method
> ### Keywords: methods
> 
> ### ** Examples
> 
> library(plateCore)
> data(plateCore)
> 
> ## Create a flowPlate
> fp <- flowPlate(pbmcPlate,wellAnnotation,"p1001")
> 
> gutterPlot(fp,chans=c("FSC-H","SSC-H","FL1-H","FL2-H","FL3-H","FL4-H"))
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>