R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(puma)
Loading required package: oligo
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit
Loading required package: oligoClasses
Welcome to oligoClasses version 1.34.0
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: Biostrings
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
colMeans, colSums, expand.grid, rowMeans, rowSums
Loading required package: IRanges
Loading required package: XVector
================================================================================
Welcome to oligo version 1.36.1
================================================================================
Loading required package: mclust
Package 'mclust' version 5.2
Type 'citation("mclust")' for citing this R package in publications.
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/puma/plotHistTwoClasses.Rd_%03d_medium.png", width=480, height=480)
> ### Name: plotHistTwoClasses
> ### Title: Stacked histogram plot of two different classes
> ### Aliases: plotHistTwoClasses
> ### Keywords: hplot
>
> ### ** Examples
>
> class1 <- rnorm(1000,0.2,0.1)
> class2 <- rnorm(1000,0.6,0.2)
> class1[which(class1<0)] <- 0
> class1[which(class1>1)] <- 1
> class2[which(class2<0)] <- 0
> class2[which(class2>1)] <- 1
> scores <- c(class1, class2)
> class1elts <- c(rep(TRUE,1000), rep(FALSE,1000))
> class2elts <- c(rep(FALSE,1000), rep(TRUE,1000))
> plotHistTwoClasses(scores, class1elts, class2elts, ylim=c(0,300))
>
>
>
>
>
> dev.off()
null device
1
>