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A numeric 100*3 matrix giving the 3D coordinates for each point. The configuration was generated as described in Shavit, Hamey and Lio' (2014), as part of an in-silico evaluation.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: conf
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in-silico distances were computed from the random configuration conf. A power law model was then used to generate matching in-silico Hi-C frequencies. Random Noise was further added to long range frequencies to mimic a typical situation for Hi-C data. This data structure is used to illustrate the usage of prepareCalib and calibrate.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: match
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in-silico distances were computed from the random configuration conf. A power law model was then used to generate matching in-silico Hi-C frequencies. Random Noise was further added to long range frequencies to mimic a typical situation for Hi-C data. The resulting frequencies were then used to construct this matrix.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: hic
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Generated with the function calibrate given the in-silico Hi-C contact matrix hic.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: calibHiC
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The list of spatial inconsistencies detected by searchInc for a fibroblasts chromosome 1.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: spatialInc
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providing 
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