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Last data update: 2014.03.03
Data Source
R Release (3.2.3)
CranContrib
BioConductor
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flags
(Package: MANOR) :
Examples of flag objects to apply to CGH arrays
This data set provides flag objects that can be applied to arrayCGH objects in order to normalize them.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: SNR.flag, amplicon.flag, chromosome.flag, control.flag, dapi.snr.flag, flags, global.spatial.flag, intensity.flag, local.spatial.flag, position.flag, ref.snr.flag, rep.flag, replicate.flag, spatial.flag, spot.flag, unique.flag, val.mark.flag
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0 images
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qscores
(Package: MANOR) :
Examples of qscore objects (quality scores) to apply to CGH arrays
This data set provides qscore objects that can be applied to normalized arrayCGH objects in order to evaluate data quality after normalization.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: clone.qscore, dyn.x.qscore, dyn.y.qscore, dynamics.qscore, pct.clone.qscore, pct.replicate.qscore, pct.spot.before.qscore, pct.spot.qscore, smoothness.qscore, var.replicate.qscore
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0 images
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spatial
(Package: MANOR) :
Examples of array-CGH data with spatial artifacts
This data set provides an example of array-CGH data with spatial artifacts, consisting of including arrayCGH objects before and after normalization
● Data Source:
BioConductor
● Keywords: datasets
● Alias: edge, edge.norm, edge.txt, gradient, gradient.gpr, gradient.norm, spatial
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2 images
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