SNP metadata used in calling for 1000 genomes pilot data – restricted to chr6
● Data Source:
BioConductor
● Keywords: datasets
● Alias: c6snp
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data frame with snp annotation regarding chr6, pertinent to the affy genomewide6 SNP chip
● Data Source:
BioConductor
● Keywords: datasets
● Alias: gw6c6.snp240
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NA19240 – 3 million reads from chromosome 6 derived from 1000 genomes bam file
● Data Source:
BioConductor
● Keywords: datasets
● Alias: n240
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data frame representing some of the OREGanno track of UCSC browser
● Data Source:
BioConductor
● Keywords: datasets
● Alias: oregdf
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data frame on a pileup for 500000 variants noted in NA19240
● Data Source:
BioConductor
● Keywords: datasets
● Alias: pup240_500k
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parsed samtools pileup result excerpt – only locations where the called base differs from the reference
● Data Source:
BioConductor
● Keywords: datasets
● Alias: pup240_disc
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slice of information on transcripts, for ind1KG vignette
● Data Source:
BioConductor
● Keywords: datasets
● Alias: rsgdf
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snp.matrix representation of called SNP on chr6 for NA19240
● Data Source:
BioConductor
● Keywords: datasets
● Alias: yri240_6
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