block.obj
(Package: ldlasso) :
GenABEL Object with Genotype and Phenotype Data
This object is of class 'gwaa.data' from the package GenABEL. It contains both genotype and phenotype data in slots 'gtdata' and 'phdata' respectively. It is a small portion of a case-control genome-wide association study of Late-Onset Alzheimer's Disease performed at Mayo Clinic Florida.
block.cood
(Package: ldlasso) :
Vector of Haplotype Block Boundaries
This is an indicator vector for haplotpye block boundaries. If there are p SNPs in the data then this vector will be of length p+1. Each element in the vector indicates whether the inter-SNP interval is a block boundary. The first and last element must always be one.
ldlasso.obj
(Package: ldlasso) :
LD LASSO Object created by the function ld_lasso_method
This is a data frame created by the function ld_lasso_method. It contains information about the parameters used to generate the three LD LASSO solutions, as well as the solutions themselves. It also contains the results from the grid search performed to estimates the cp-optimal solution. (see cp.obj) Some basic map information is also stored here for use when plotting.