Myb_prom_FB
(Package: r3Cseq) :
Myb_prom_FB a data set for the example of r3Cseq analysis
The example aligned reads generated by 3C-Seq protocol from fetal brain. The promoter region of the Myb's gene was selected as the viewpoint. This data was transformed from aligned reads shown in the BAM file to GRanged object by using Rsamtools.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: Myb_prom_FB
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Myb_prom_FL
(Package: r3Cseq) :
Myb_prom_FL a data set for the example of r3Cseq analysis
The example aligned reads generated by 3C-Seq protocol from fetal liver. The promoter region of the Myb's gene was selected as the viewpoint. This data was transformed from aligned reads shown in the BAM file to GRanged object by using Rsamtools.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: Myb_prom_FL
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enzymeDb
(Package: r3Cseq) :
Rebase The Restriction Enzyme Database
The database includes all restriction enzyme information from the REBASE database.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: enzymeDb
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The human (hg18) reference genes from UCSC
● Data Source:
BioConductor
● Keywords: datasets
● Alias: hg18refGene
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The human (hg19) reference genes from UCSC
● Data Source:
BioConductor
● Keywords: datasets
● Alias: hg19refGene
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The mouse (mm10) reference genes from UCSC
● Data Source:
BioConductor
● Keywords: datasets
● Alias: mm10refGene
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The mouse (mm9) reference genes from UCSC
● Data Source:
BioConductor
● Keywords: datasets
● Alias: mm9refGene
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The rat (rn5) reference genes from UCSC
● Data Source:
BioConductor
● Keywords: datasets
● Alias: rn5refGene
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