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R package s: topGO

Last data update: 2014.03.03

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GOdata (Package: topGO) : Sample topGOdata and topGOresult objects

The GOdata contains an instance of a topGOdata object. It can be used to run an enrichment analysis directly.

● Data Source: BioConductor
● Keywords: datasets
● Alias: GOdata, resultFisher, resultKS
● 0 images

geneList (Package: topGO) : A toy example of a list of gene identifiers and the respective p-values

The geneList data is compiled from a differential expression analysis of the ALL dataset. It contains just a small number of genes with the corespondent p-values. The information on where to find the GO annotations is stored in the ALL object.

● Data Source: BioConductor
● Keywords: datasets
● Alias: affyLib, geneList, topDiffGenes
● 0 images