Some convenience functions for getting a connection object to (or collecting information about) the package annotation DB.
● Data Source:
BioConductor
● Keywords: datasets, utilities
● Alias: lumiHumanAll_dbInfo, lumiHumanAll_dbconn, lumiHumanAll_dbfile, lumiHumanAll_dbschema
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lumiHumanIDMapping
(Package: lumiHumanIDMapping) :
Illumina ID Mapping information of all Human expression chips
Welcome to the lumiHumanIDMapping ID mapping Package. The purpose of this package is to provide ID mappings between different types of Illumina identifiers of Human Expression chips and nuIDs, and also mappings from nuIDs to the the most recent Homo sapiens RefSeq release and Entez_Gene_ID. The library includes the data tables corresponding to all released Illumian Human Expression chips before the package releasing date. Each table includes columns "Search_key" ("Search_Key"), "Target" ("ILMN_Gene"), "Accession", "Symbol", "ProbeId" ("Probe_Id") and "nuID". It also includes a nuID_MappingInfo table, which keeps the mapping information of nuID to Accession ID, Entrez_Gene_ID and Symbol. For the version after 1.8.0, all mapping information was based on Illumina manifest files. Information from new versions of manifest files will replace the old ones with the same probe id. The package is supposed to be used together with the Bioconductor lumi package.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiHumanIDMapping
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Some convenience functions for getting a connection object to (or collecting information about) the package annotation DB.
● Data Source:
BioConductor
● Keywords: datasets, utilities
● Alias: lumiHumanIDMapping_dbInfo, lumiHumanIDMapping_dbconn, lumiHumanIDMapping_dbfile
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lumiHumanIDMapping_nuID
(Package: lumiHumanIDMapping) :
Mapping nuIDs of Illumina Human chips to the most recent Homo sapiens RefSeq release
We mapped nuIDs of Illumina Human chips by BLASTing each probe sequence (converted from nuID) against the the most recent Homo sapiens RefSeq release. The mapping also includes the mapping quality information.
● Data Source:
BioConductor
● Keywords: datasets, utilities
● Alias: lumiHumanIDMapping_nuID
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lumiMouseAllACCNUM is an R object that contains mappings between a manufacturer's identifiers and manufacturers accessions.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllACCNUM
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lumiMouseAllALIAS2PROBE
(Package: lumiMouseAll.db) :
Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
lumiMouseAllALIAS is an R object that provides mappings between common gene symbol identifiers and manufacturer identifiers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllALIAS2PROBE
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Welcome to the lumiMouseAll.db annotation Package. The purpose of this package is to provide detailed information about the lumiMouseAll platform. This package is updated biannually.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAll, lumiMouseAll.db
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lumiMouseAllCHR is an R object that provides mappings between a manufacturer identifier and the chromosome that contains the gene of interest.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllCHR
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lumiMouseAllCHRLENGTHS provides the length measured in base pairs for each of the chromosomes.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllCHRLENGTHS
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lumiMouseAllCHRLOC is an R object that maps manufacturer identifiers to the starting position of the gene. The position of a gene is measured as the number of base pairs.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllCHRLOC, lumiMouseAllCHRLOCEND
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