lumiMouseAllENSEMBL
(Package: lumiMouseAll.db) :
Map Ensembl gene accession numbers with Entrez Gene identifiers
lumiMouseAllENSEMBL is an R object that contains mappings between manufacturer identifiers and Ensembl gene accession numbers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllENSEMBL, lumiMouseAllENSEMBL2PROBE
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lumiMouseAllENTREZID is an R object that provides mappings between manufacturer identifiers and Entrez Gene identifiers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllENTREZID, lumiMouseAllLOCUSID
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lumiMouseAllENZYME
(Package: lumiMouseAll.db) :
Maps between Manufacturer IDs and Enzyme Commission (EC) Numbers
lumiMouseAllENZYME is an R object that provides mappings between manufacturer identifiers and EC numbers. lumiMouseAllENZYME2PROBE is an R object that maps Enzyme Commission (EC) numbers to manufacturer identifiers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllENZYME, lumiMouseAllENZYME2PROBE
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lumiMouseAllGENENAME is an R object that maps manufacturer identifiers to the corresponding gene name.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllGENENAME
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lumiMouseAllGO
(Package: lumiMouseAll.db) :
Maps between manufacturer IDs and Gene Ontology (GO) IDs
lumiMouseAllGO is an R object that provides mappings between manufacturer identifiers and the GO identifiers that they are directly associated with. This mapping and its reverse mapping (lumiMouseAllGO2PROBE) do NOT associate the child terms from the GO ontology with the gene. Only the directly evidenced terms are represented here.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllGO, lumiMouseAllGO2ALLPROBES, lumiMouseAllGO2PROBE
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lumiMouseAllMAPCOUNTS
(Package: lumiMouseAll.db) :
Number of mapped keys for the maps in package lumiMouseAll.db
lumiMouseAllMAPCOUNTS provides the "map count" (i.e. the count of mapped keys) for each map in package lumiMouseAll.db.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllMAPCOUNTS
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lumiMouseAllMGI
(Package: lumiMouseAll.db) :
Map MGI gene accession numbers with manufacturer identifiers
lumiMouseAllMGI is an R object that contains mappings between manufacturer identifiers and Jackson Laboratory MGI gene accession numbers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllMGI, lumiMouseAllMGI2PROBE
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lumiMouseAllORGANISM is an R object that contains a single item: a character string that names the organism for which lumiMouseAll was built. lumiMouseAllORGPKG is an R object that contains a chararcter vector with the name of the organism package that a chip package depends on for its gene-centric annotation.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllORGANISM, lumiMouseAllORGPKG
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lumiMouseAllPATH
(Package: lumiMouseAll.db) :
Mappings between probe identifiers and KEGG pathway identifiers
KEGG (Kyoto Encyclopedia of Genes and Genomes) maintains pathway data for various organisms.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllPATH, lumiMouseAllPATH2PROBE
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lumiMouseAllPFAM is an R object that provides mappings between a manufacturer identifier and the associated Pfam identifiers.
● Data Source:
BioConductor
● Keywords: datasets
● Alias: lumiMouseAllPFAM
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