R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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Results 1 - 7 of 7 found.
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format_from_gmt (Package: ACSNMineR) : Import data from gmt files

Import data from gmt files Convert gmt file to dataframe that can be used for anaysis

● Data Source: CranContrib
● Keywords:
● Alias: format_from_gmt
● 0 images

reverselog_trans (Package: ACSNMineR) : Scale for barplots and heatmaps

Outputs the "-log" of a scale

● Data Source: CranContrib
● Keywords:
● Alias: reverselog_trans
● 0 images

p.val.calc (Package: ACSNMineR) : Calculate p-value

Calculate p-value

● Data Source: CranContrib
● Keywords:
● Alias: p.val.calc
● 0 images

enrichment (Package: ACSNMineR) : Gene set enrichment analysis

Compute and represent gene set enrichment from your data based on pre-saved maps from ACSN or user imported maps. The gene set enrichment can be run with hypergeometric test or Fisher exact test, and can use multiple corrections. Visualization of data can be done either by barplots or heatmaps.

● Data Source: CranContrib
● Keywords:
● Alias: enrichment
● 0 images

cnum (Package: ACSNMineR) : Convert to numeric

Convert to numeric

● Data Source: CranContrib
● Keywords:
● Alias: cnum
● 0 images

represent_enrichment (Package: ACSNMineR) : Graphic representation of enrichment

Graphic representation of enrichment

● Data Source: CranContrib
● Keywords:
● Alias: represent_enrichment
● 1 images

multisample_enrichment (Package: ACSNMineR) : Automated gene set analysis for multiple sets

Automated gene set analysis for multiple sets

● Data Source: CranContrib
● Keywords:
● Alias: multisample_enrichment
● 0 images