unlist2
(Package: AnnotationDbi) :
A replacement for unlist() that does not mangle the names
unlist2 is a replacement for base::unlist() that does not mangle the names.
● Data Source:
BioConductor
● Keywords: manip, utilities
● Alias: unlist2
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The AnnDbObj class is the most general container for storing any kind of SQLite-based annotation data.
● Data Source:
BioConductor
● Keywords: classes, methods
● Alias: AnnDbObj-objects
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AnnDbPkg-checker
(Package: AnnotationDbi) :
Check the SQL data contained in an SQLite-based annotation package
Check the SQL data contained in an SQLite-based annotation package.
● Data Source:
BioConductor
● Keywords: utilities
● Alias: AnnDbPkg-checker
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AnnotationDb-objects
(Package: AnnotationDbi) :
AnnotationDb objects and their progeny, methods etc.
AnnotationDb is the virtual base class for all annotation packages. It contain a database connection and is meant to be the parent for a set of classes in the Bioconductor annotation packages. These classes will provide a means of dispatch for a widely available set of select methods and thus allow the easy extraction of data from the annotation packages.
● Data Source:
BioConductor
● Keywords: classes, methods
● Alias: AnnotationDb, AnnotationDb-class, ChipDb-class, GODb-class, InparanoidDb-class, OrgDb-class, ReactomeDb-class, class:AnnotationDb
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AnnotationDbi objects, classes and methods that are not intended to be used directly.
● Data Source:
BioConductor
● Keywords: classes, internal, methods
● Alias: debugSQL
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Bimap-direction
(Package: AnnotationDbi) :
Methods for getting/setting the direction of a Bimap object,
These methods are part of the Bimap interface (see ?Bimap for a quick overview of the Bimap objects and their interface).
● Data Source:
BioConductor
● Keywords: methods
● Alias: Bimap-direction
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These methods allow the user to manipulate any Bimap object as if it was an environment. This environment-like API is provided for backward compatibility with the traditional environment-based maps.
● Data Source:
BioConductor
● Keywords: interface, methods
● Alias: Bimap-envirAPI
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Bimap-keys
(Package: AnnotationDbi) :
Methods for manipulating the keys of a Bimap object
These methods are part of the Bimap interface (see ?Bimap for a quick overview of the Bimap objects and their interface).
● Data Source:
BioConductor
● Keywords: methods
● Alias: Bimap-keys
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Bimap-toTable
(Package: AnnotationDbi) :
Methods for manipulating a Bimap object in a data-frame style
These methods are part of the Bimap interface (see ?Bimap for a quick overview of the Bimap objects and their interface).
● Data Source:
BioConductor
● Keywords: methods
● Alias: Bimap-toTable
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Bimap
(Package: AnnotationDbi) :
Bimap objects and the Bimap interface
What we usually call "annotation maps" are in fact Bimap objects. In the following sections we present the bimap concept and the Bimap interface as it is defined in AnnotationDbi.
● Data Source:
BioConductor
● Keywords: classes, interface
● Alias: Bimap
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