R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Data Type

Packages
Functions
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Data set

Classification

Results 1 - 10 of 18 found.
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ecoli (Package: BOG) :

This is protein details for Escherichia coli O157:H7 str. Sakai

● Data Source: CranContrib
● Keywords:
● Alias: ecoli
● 0 images

BOG (Package: BOG) :

This function is the flagship function of BOG. It reads data and COG annotation files with user specified setting for analysis. It performs hypergeometric test, rank test (Mann-Whiteny test), and GSEA test (optional).

● Data Source: CranContrib
● Keywords:
● Alias: BOG
● 0 images

printGSEA (Package: BOG) :

If gsea argument is set TRUE in BOG() command, this command print the outcome of GSEA test.

● Data Source: CranContrib
● Keywords:
● Alias: printGSEA
● 0 images

printRANK (Package: BOG) :

This command print the outcome of RANK(Mann-Whiteny) test.

● Data Source: CranContrib
● Keywords:
● Alias: printRANK
● 0 images

anthracis_iron (Package: BOG) :

This is the anthracis data of (Carson et.al,2009) with adjusted p-value produced by DIME. It consists of anthracis geneID and adjusted p-value for gene expression between two conditions. If a user does not specify the data argument in BOG() command, this built-in data will be loaded by default as an example.

● Data Source: CranContrib
● Keywords:
● Alias: anthracis_iron
● 0 images

DIMEplot (Package: BOG) :

This function provides visualization for the best fitted mixture model and enables a user to evaluate the fitted mixure model graphically. Inset in the plot shows a zoomed-in plot of individual components of the model. This is relevant only if data.type="data".

● Data Source: CranContrib
● Keywords:
● Alias: DIMEplot
● 0 images

internalhgplot (Package: BOG) :

This is an internal function so that it is not expected for a user to use it.

● Data Source: CranContrib
● Keywords:
● Alias: internalhgplot
● 0 images

difficile (Package: BOG) :

This is protein details for Clostridium difficile 630 with COG annotated.

● Data Source: CranContrib
● Keywords:
● Alias: difficile
● 0 images

BOGest (Package: BOG) :

This is an internal function so that it is not expected for a user to use it.

● Data Source: CranContrib
● Keywords:
● Alias: BOGest
● 0 images

brucella (Package: BOG) :

This is protein details for Brucella suis 1330 Sequence with COG annotated.

● Data Source: CranContrib
● Keywords:
● Alias: brucella
● 0 images