R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 10 of 12 found.
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BSParams-class (Package: BSgenome) : Class "BSParams"

A parameter class for representing all parameters needed for running the bsapply method.

● Data Source: BioConductor
● Keywords: classes
● Alias: BSParams, BSParams-class, class:BSParams
● 0 images

BSgenome-class (Package: BSgenome) : BSgenome objects

The BSgenome class is a container for storing the full genome sequences of a given organism. BSgenome objects are usually made in advance by a volunteer and made available to the Bioconductor community as "BSgenome data packages". See ?available.genomes for how to get the list of "BSgenome data packages" curently available.

● Data Source: BioConductor
● Keywords: classes, methods
● Alias: BSgenome, BSgenome-class, class:BSgenome
● 0 images

BSgenome-utils (Package: BSgenome) : BSgenome utilities

Utilities for BSgenome objects.

● Data Source: BioConductor
● Keywords: methods, utilities
● Alias: BSgenome-utils
● 0 images

BSgenomeForge (Package: BSgenome) : The BSgenomeForge functions

A set of functions for making a BSgenome data package.

● Data Source: BioConductor
● Keywords: manip
● Alias: BSgenomeForge
● 0 images

BSgenomeViews-class (Package: BSgenome) : BSgenomeViews objects

The BSgenomeViews class is a container for storing a set of genomic positions on a BSgenome object, called the "subject" in this context.

● Data Source: BioConductor
● Keywords: classes, methods
● Alias: BSgenomeViews-class, class:BSgenomeViews
● 0 images

SNPlocs-class (Package: BSgenome) : SNPlocs objects

The SNPlocs class is a container for storing known SNP locations for a given organism. SNPlocs objects are usually made in advance by a volunteer and made available to the Bioconductor community as "SNPlocs data packages". See ?available.SNPs for how to get the list of "SNPlocs data packages" curently available.

● Data Source: BioConductor
● Keywords: classes, methods
● Alias: SNPlocs, SNPlocs-class, class:SNPlocs
● 0 images

XtraSNPlocs-class (Package: BSgenome) : XtraSNPlocs objects

The XtraSNPlocs class is a container for storing extra SNP locations and alleles for a given organism. While a SNPlocs object can store only molecular variations of class snp, an XtraSNPlocs object contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, multinucleotide-polymorphism).

● Data Source: BioConductor
● Keywords: classes, methods
● Alias: XtraSNPlocs, XtraSNPlocs-class, class:XtraSNPlocs
● 0 images

available.genomes (Package: BSgenome) : Find available/installed genomes

available.genomes gets the list of BSgenome data packages that are available in the Bioconductor repositories for your version of R/Bioconductor.

● Data Source: BioConductor
● Keywords: manip
● Alias: available.genomes, getBSgenome, installed.genomes
● 0 images

bsapply (Package: BSgenome) : bsapply

Apply a function to each chromosome in a genome.

● Data Source: BioConductor
● Keywords: manip
● Alias: bsapply
● 0 images

export-methods (Package: BSgenome) : Export a BSgenome object as a FASTA or twoBit file

export methods for BSgenome objects.

● Data Source: BioConductor
● Keywords: methods, utilities
● Alias: export-methods
● 0 images