Job files are created based on the brew template template.file . This file is processed with brew and then submitted to the queue using the bsub command. Jobs are killed using the bkill command and the list of running jobs is retrieved using bjobs -u $USER -w . The user must have the appropriate privileges to submit, delete and list jobs on the cluster (this is usually the case).
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● Keywords:
● Alias: makeClusterFunctionsLSF
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loadResults
(Package: BatchJobs) :
Loads result files for id vector.
Loads result files for id vector.
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● Keywords:
● Alias: loadResults
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Mutator function for src.dirs in makeRegistry .
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● Keywords:
● Alias: addRegistrySourceDirs
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ONLY FOR INTERNAL USAGE.
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● Keywords: internal
● Alias: updateRegistry
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ONLY FOR INTERNAL USAGE.
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● Keywords: internal
● Alias: dbCreateJobDefTable
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getJobs
(Package: BatchJobs) :
Get jobs from registry by id.
Get jobs from registry by id.
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● Keywords:
● Alias: getJobs
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Set job names.
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● Keywords:
● Alias: setJobNames
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applyJobFunction ONLY FOR INTERNAL USAGE.
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● Keywords: internal
● Alias: applyJobFunction
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Installation is done via callFunctionOnSSHWorkers and install.packages .
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● Keywords:
● Alias: installPackagesOnSSHWorkers
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makeClusterFunctionsMulticore
(Package: BatchJobs) :
Use multiple cores on local Linux machine to spawn parallel jobs.
Jobs are spawned by starting multiple R sessions on the commandline (similar like on true batch systems). Packages parallel or multicore are not used in any way.
● Data Source:
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● Keywords:
● Alias: makeClusterFunctionsMulticore
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