loadTopAnatData
(Package: BgeeDB) :
Retrieve data from Bgee to perform GO-like enrichment of anatomical terms, mapped to genes by expression patterns.
This function loads a mapping from genes to anatomical structures based on calls of expression in anatomical structures. It also loads the structure of the anatomical ontology.
makeTable
(Package: BgeeDB) :
Formats results of the enrichment test on anatomical structures.
This function loads the results from the topGO test and creates an output table with organ names, fold enrichment and FDR. Data are sorted by p-value and only terms below the specified FDR cutoff are included.
topAnat
(Package: BgeeDB) :
Produces an object allowing to perform GO-like enrichment of anatomical terms using the topGO package
This function produces a topAnatObject, ready to use for gene set enrichment testing using functions from the topGO package. This object uses the Uberon ontology instead of the GO ontology.