R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 10 of 61 found.
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AAString-class (Package: Biostrings) : AAString objects

An AAString object allows efficient storage and manipulation of a long amino acid sequence.

● Data Source: BioConductor
● Keywords: classes, methods
● Alias: AAString-class, class:AAString
● 0 images

AMINO_ACID_CODE (Package: Biostrings) : The Single-Letter Amino Acid Code

Named character vector mapping single-letter amino acid representations to 3-letter amino acid representations.

● Data Source: BioConductor
● Keywords: data, utilities
● Alias: AMINO_ACID_CODE
● 0 images

AlignedXStringSet-class (Package: Biostrings) : AlignedXStringSet and QualityAlignedXStringSet objects

The AlignedXStringSet and QualityAlignedXStringSet classes are containers for storing an aligned XStringSet.

● Data Source: BioConductor
● Keywords: classes, methods
● Alias: AlignedXStringSet, AlignedXStringSet-class, AlignedXStringSet0, AlignedXStringSet0-class, QualityAlignedXStringSet, QualityAlignedXStringSet-class, class:AlignedXStringSet, class:AlignedXStringSet0, class:QualityAlignedXStringSet
● 0 images

BOC_SubjectString-class (Package: Biostrings) : BOC_SubjectString and BOC2_SubjectString objects

WARNING: BOC_SubjectString and BOC2_SubjectString objects are deprecated!

● Data Source: BioConductor
● Keywords: classes, methods
● Alias: BOC2_SubjectString, BOC2_SubjectString-class, BOC_SubjectString, BOC_SubjectString-class, class:BOC2_SubjectString, class:BOC_SubjectString
● 0 images

Biostrings internals (Package: Biostrings) : Biostrings internals

Biostrings objects, classes and methods that are not intended to be used directly.

● Data Source: BioConductor
● Keywords: classes, internal, methods
● Alias: SparseList, SparseList-class, class:SparseList
● 0 images

DNAString-class (Package: Biostrings) : DNAString objects

A DNAString object allows efficient storage and manipulation of a long DNA sequence.

● Data Source: BioConductor
● Keywords: classes, methods
● Alias: DNAString-class, class:DNAString
● 0 images

GENETIC_CODE (Package: Biostrings) : The Standard Genetic Code and its known variants

Two predefined objects (GENETIC_CODE and RNA_GENETIC_CODE) that represent The Standard Genetic Code.

● Data Source: BioConductor
● Keywords: data, utilities
● Alias: GENETIC_CODE, GENETIC_CODE_TABLE, RNA_GENETIC_CODE, getGeneticCode
● 0 images

IUPAC_CODE_MAP (Package: Biostrings) : The IUPAC Extended Genetic Alphabet

The IUPAC_CODE_MAP named character vector contains the mapping from the IUPAC nucleotide ambiguity codes to their meaning.

● Data Source: BioConductor
● Keywords: data, utilities
● Alias: IUPAC_CODE_MAP, mergeIUPACLetters
● 0 images

InDel-class (Package: Biostrings) : InDel objects

The InDel class is a container for storing insertion and deletion information.

● Data Source: BioConductor
● Keywords: classes, methods
● Alias: InDel, InDel-class, class:InDel
● 0 images

MIndex-class (Package: Biostrings) : MIndex objects

The MIndex class is the basic container for storing the matches of a set of patterns in a subject sequence.

● Data Source: BioConductor
● Keywords: classes, methods
● Alias: ByPos_MIndex-class, MIndex, MIndex-class, class:ByPos_MIndex, class:MIndex
● 0 images