R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
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Results 1 - 10 of 15 found.
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CGHbase-package (Package: CGHbase) : CGHbase: Base functions and classes for arrayCGH data analysis.

CGHbase: Base functions and classes for arrayCGH data analysis.

● Data Source: BioConductor
● Keywords: package
● Alias: CGHbase, CGHbase-package
● 0 images

avedist (Package: CGHbase) : Retrieve regions information from cghRegions object.

This function accesses the regions information stored in the featureData of an object derived from the cghRegions-class.

● Data Source: BioConductor
● Keywords: manip
● Alias: avedist, nclone
● 0 images

chromosomes (Package: CGHbase) : Retrieve feature position data from cgh objects.

These generic functions access the position data stored in the featureData of an object derived from the cghRaw-class, cghSeg-class or cghCall-class.

● Data Source: BioConductor
● Keywords: manip
● Alias: bpend, bpstart, chromosomes
● 0 images

cghCall (Package: CGHbase) :

Container for aCGH data and experimental metadata. cghCall class is derived from eSet, and requires the following matrices of equal dimension as assayData members:

● Data Source: BioConductor
● Keywords: classes
● Alias: cghCall, class:cghCall
● 0 images

cghRaw (Package: CGHbase) :

Container for aCGH data and experimental metadata. cghRaw class is derived from eSet, and requires a matrix named copynumber as assayData member. Furthermore, columns named Chromosome, Start, and End are required as featureData members, containing feature position information.

● Data Source: BioConductor
● Keywords: classes
● Alias: cghRaw, class:cghRaw
● 2 images

cghRegions (Package: CGHbase) :

Container for aCGH regions data and experimental metadata. cghRegions class is derived from eSet, and requires a matrix named regions as assayData member. Furthermore, columns named Chromosome, Start, End, Nclone, and Avedist are required as featureData members, containing region and position information.

● Data Source: BioConductor
● Keywords: classes
● Alias: cghRegions, class:cghRegions
● 2 images

cghSeg (Package: CGHbase) :

Container for aCGH data and experimental metadata. cghSeg class is derived from eSet, and requires a matrix named copynumber as well as a matrix named segmented as assayData members of equal dimensions. Furthermore, columns named Chromosome, Start, and End are required as featureData members, containing feature position information.

● Data Source: BioConductor
● Keywords: classes
● Alias: cghSeg, class:cghSeg
● 0 images

copynumber (Package: CGHbase) : Retrieve copynumber data from cgh objects.

These generic functions access the copynumber values of assay data stored in an object derived from the cghRaw-class, cghSeg-class or cghCall-class.

● Data Source: BioConductor
● Keywords: manip
● Alias: calls, calls<-, copynumber, copynumber<-, segmented, segmented<-
● 0 images

frequencyPlot (Package: CGHbase) : Visualization of aCGH regions.

This function creates a frequency plot for aCGH regions.

● Data Source: BioConductor
● Keywords: misc
● Alias: frequencyPlot
● 0 images

frequencyPlotCalls (Package: CGHbase) : Visualization of aCGH profiles.

This function creates a frequency plot for aCGH profiles.

● Data Source: BioConductor
● Keywords: misc
● Alias: frequencyPlotCalls
● 0 images