R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
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Results 1 - 3 of 3 found.
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CopywriteR (Package: CopywriteR) :

Generates DNA copy number profiles from targeted sequencing data using off-target reads

● Data Source: BioConductor
● Keywords:
● Alias: CopywriteR, list.files
● 0 images

plotCNA (Package: CopywriteR) :

plotCNA analyses CopywriteR output using the segmentation algorithm CBS and creates both whole-genome and per-chromosome plots.

● Data Source: BioConductor
● Keywords:
● Alias: plotCNA
● 0 images

preCopywriteR (Package: CopywriteR) :

preCopywriteR is used to generate helper files (blacklist, bin region, GC-content, and mappability .bed files) for the desired bin size from pre-assembled 1 kb helper files. These binary 1 kb helper files are available at https://github.com/PeeperLab/CopywriteR for hg18, hg19, hg38, mm9 and mm10 reference genomes.

● Data Source: BioConductor
● Keywords:
● Alias: preCopywriteR
● 0 images