R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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getConstraint (Package: DCODE) :

This function prints the linear constraint to which the chosen peptide in the reference frame pep is subject when condisering gene overlap with frameshift frame.

● Data Source: CranContrib
● Keywords: print
● Alias: getConstraint
● 0 images

build_data (Package: DCODE) :

To be run before the first use of function getConstraint. This function generates the variables aaList, geneticCode and peptideList, a list of all the peptides (up to length 5), used by function getConstraint.

● Data Source: CranContrib
● Keywords:
● Alias: build_data
● 0 images

DCODE-package (Package: DCODE) :

Traversal graph algorithm for listing linear n-peptide constraints for overlapping protein regions.

● Data Source: CranContrib
● Keywords: amino acid composition, codon usage, double-coding sequences, genetic code, linear and logical constraints, overlapping gene, stop codons
● Alias: DCODE, DCODE-package
● 0 images

DCODE-internal (Package: DCODE) : Internal DCODE Functions

Internal DCODE functions

● Data Source: CranContrib
● Keywords:
● Alias: compRev, deleteStops, getAllSeqs, getConstraint_rec1, getConstraint_rec2, pepList, posLecturef1, posLecturef2, printConstraint, stopCodons, toPep
● 0 images