AN.test
(Package: DEGraph) :
Performs the Adaptive Neyman test of Fan and Lin (1998)
Performs the Adaptive Neyman test of Fan and Lin (1998).
● Data Source:
BioConductor
● Keywords:
● Alias: AN.test
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BS.test
(Package: DEGraph) :
Performs the test of Bai and Saranadasa (1996)
Performs the test of Bai and Saranadasa (1996).
● Data Source:
BioConductor
● Keywords:
● Alias: BS.test
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getConnectedComponentList
(Package: DEGraph) :
Given a graph, returns a list of its connected components
Given a graph, returns a list of its connected components (which are also graph objects), ordered by decreasing number of nodes.
● Data Source:
BioConductor
● Keywords:
● Alias: getConnectedComponentList
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getKEGGPathways
(Package: DEGraph) :
Builds a graph for each of the KEGG pathways
Builds a graph for each of the KEGG pathways.
● Data Source:
BioConductor
● Keywords:
● Alias: getKEGGPathways
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getSignedGraph
(Package: DEGraph) :
Given a graph, builds a signed version of the adjacency matrix
Given a graph, builds a signed version of the adjacency matrix taking into account the type of interaction (e.g., activation or inhibition).
● Data Source:
BioConductor
● Keywords:
● Alias: getSignedGraph
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graph.T2.test
(Package: DEGraph) :
Performs the Hotelling T2 test in Fourier space
Performs the Hotelling T2 test in Fourier space.
● Data Source:
BioConductor
● Keywords:
● Alias: graph.T2.test
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hyper.test
(Package: DEGraph) :
Performs an hypergeometric test of enrichment of a set of
Performs an hypergeometric test of enrichment of a set of hypotheses in significant elements.
● Data Source:
BioConductor
● Keywords:
● Alias: hyper.test
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laplacianFromA
(Package: DEGraph) :
Calculates the Laplacian associated to an adjacency matrix
Calculates the Laplacian associated to an adjacency matrix.
● Data Source:
BioConductor
● Keywords:
● Alias: laplacianFromA
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plotValuedGraph
(Package: DEGraph) :
Plots a graph with nodes colored according to a quantitative variable
Plots a graph with nodes colored according to a quantitative variable.
● Data Source:
BioConductor
● Keywords:
● Alias: plotValuedGraph
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Generates a random graph.
● Data Source:
BioConductor
● Keywords:
● Alias: randomWAMGraph
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providing 
.