R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
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Results 1 - 10 of 85 found.
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add.missing.F1s (Package: DOQTL) : Add Missing F1 Samples

Given a set of CC or DO founders, impute the genotypes or intensities of missing F1s.

● Data Source: BioConductor
● Keywords:
● Alias: add.missing.F1s
● 0 images

add.sig.thr (Package: DOQTL) :

Given a set of thresholds, add the autosomal and X chromosome thresholds to an existing QTL plot. The user may call plot() and then this function, but plot.doqtl contains a 'sig.thr' argument and will call this automatically. The threhsolds can be obtained from get.sig.thr

● Data Source: BioConductor
● Keywords: permutations, significance
● Alias: add.sig.thr
● 0 images

add.slash (Package: DOQTL) :

If the argument does not end with a forward slash, add one.

● Data Source: BioConductor
● Keywords:
● Alias: add.slash
● 0 images

addLog (Package: DOQTL) :

When two numbers that are on the log scale must be summed, transforming them back to the non-log scale and taking the sum is slow. This function takes the exp() of the values only when neccessary.

● Data Source: BioConductor
● Keywords:
● Alias: addLog
● 0 images

addLogVector (Package: DOQTL) :

When a summation must be taken on a vector of numbers that are on the log scale, transforming them back to the non-log scale and taking the sum is slow. This function takes the exp() of the values only when neccessary.

● Data Source: BioConductor
● Keywords:
● Alias: addLogVector
● 0 images

assoc.map (Package: DOQTL) :

Given the phenotypes and genotype probabilities, impute the Sanger SNPs onto DO genomes and perform association mapping.

● Data Source: BioConductor
● Keywords: association, qtl, sanger
● Alias: assoc.map, assoc.map.perms
● 0 images

assoc.plot (Package: DOQTL) :

After performing association mapping using assoc.map, plot the mapping statistic along with genes in the QTL interval.

● Data Source: BioConductor
● Keywords: association, qtl
● Alias: assoc.plot
● 0 images

assoc.scan1 (Package: DOQTL) :

Not intended for external use.

● Data Source: BioConductor
● Keywords: internal
● Alias: assoc.scan1
● 0 images

assoc.scan2 (Package: DOQTL) :

Not intended for external use.

● Data Source: BioConductor
● Keywords: internal
● Alias: assoc.scan2
● 0 images

bayesint (Package: DOQTL) : Find a Bayesian Credible Interval around a QTL.

This function normalizes the area under the QTL curve on the given chromosome and finds a region that is 95

● Data Source: BioConductor
● Keywords: QTL
● Alias: bayesint
● 0 images