R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Data Type

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Results 1 - 10 of 10 found.
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scoresinglemod (Package: DivE) :

Determines the set of scores corresponding to a single model fit to a diversity values of subsamples of a given sample and its nested samples.

● Data Source: CranContrib
● Keywords: diversity
● Alias: print.scoresingleMod, print.summary.scoresingleMod, scoresinglemod, scoresinglemod.default, summary.scoresingleMod
● 0 images

comb.dm (Package: DivE) :

Implements the DivE diversity estimator. Combines multiple objects of class DiversityMaster.

● Data Source: CranContrib
● Keywords: diversity
● Alias: comb.dm
● 0 images

DiveMaster (Package: DivE) :

Implements the DivE diversity estimator.

● Data Source: CranContrib
● Keywords: diversity
● Alias: DiveMaster, DiveMaster.default, print.DiversityMaster, print.summary.DiversityMaster, summary.DiversityMaster
● 0 images

Curvature (Package: DivE) :

Calculates the curvature of the rarefaction curve of the full observed data.

● Data Source: CranContrib
● Keywords: diversity
● Alias: Curvature
● 0 images

popdiversity (Package: DivE) :

Calculates the species richness at a specified population size, taking an object of class DiversityMaster as an input.

● Data Source: CranContrib
● Keywords: diversity
● Alias: popdiversity
● 0 images

fitsinglemod (Package: DivE) :

Function to fit a model to the diversity values of subsamples of a given sample and its nested samples.

● Data Source: CranContrib
● Keywords: diversity
● Alias: fitsinglemod, fitsinglemod.default, plot.fitsingleMod, print.fitsingleMod, print.summary.fitsingleMod, summary.fitsingleMod
● 0 images

divsamplenum (Package: DivE) :

Function to generate an integer sequence representing the lengths of nested samples of sample

● Data Source: CranContrib
● Keywords: diversity
● Alias: divsamplenum, divsamplenum.default
● 0 images

divsubsamples (Package: DivE) :

Function to generate the rarefaction data from a given sample

● Data Source: CranContrib
● Keywords: diversity
● Alias: divsubsamples, divsubsamples.default, print.divsubsamples, print.summary.divsubsamples, summary.divsubsamples
● 0 images

DivE-package (Package: DivE) :

R-package DivE contains functions for the DivE estimator (Laydon, D. et al., Quantification of HTLV-1 clonality and TCR diversity, PLOS Comput. Biol. 2014). The DivE estimator is a heuristic approach to estimate the number of classes or the number of species (species richness) in a population.

● Data Source: CranContrib
● Keywords: package
● Alias: DivE, DivE-package
● 0 images

DivE-internal (Package: DivE) :

Internal functions for DivE

● Data Source: CranContrib
● Keywords:
● Alias: BBprop, Bfunprop, BinFunk, BinFunkSingleNumber, DivE-internal, IsWholeNumber, combine.criteria, combined.fit, convert.ranges, crossings, div.count, divsubsamples_nested, fitallSubs, fitsample, format.input, gen.rarefac.div, gen.rarefac.lengths, gen.subsamp.lengths, geo.mean, global.fit, is.mono, is.slowing, local.fit, model.cost, model.cost.abs, msr.curves, multiple.scoring, pred.div, ref.area, simm, single.mod.score, single.var
● 0 images