R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 7 of 7 found.
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EBarrays-internal (Package: EBarrays) : Internal EBarrays Functions

Internal EBarrays functions.

● Data Source: BioConductor
● Keywords: internal
● Alias: emfit0, emfit1, emfit2, emfit3, emfitmv
● 0 images

crit.fun (Package: EBarrays) : Find posterior probability threshold to control FDR

Find posterior probability threshold to control FDR

● Data Source: BioConductor
● Keywords:
● Alias: crit.fun
● 0 images

ebarraysFamily-class (Package: EBarrays) : Class of Families to be used in the EBarrays package

Objects used as family in the emfit function.

● Data Source: BioConductor
● Keywords: models
● Alias: coerce,character,ebarraysFamily-method, eb.createFamilyGG, eb.createFamilyLNN, eb.createFamilyLNNMV, ebarraysFamily-class, show,ebarraysFamily-method
● 0 images

ebplots (Package: EBarrays) : Various plotting routines in the EBarrays package

Various plotting routines, used for diagnostic purposes

● Data Source: BioConductor
● Keywords: models
● Alias: checkCCV, checkModel, checkVarsMar, checkVarsQQ, ebplots, plot.ebarraysEMfit, plotCluster, plotMarginal
● 0 images

emfit (Package: EBarrays) : Implements EM algorithm for gene expression mixture model

Implements the EM algorithm for gene expression mixture model

● Data Source: BioConductor
● Keywords: models
● Alias: ebarraysEMfit-class, emfit, emfit,ExpressionSet,character,ebarraysPatterns-method, emfit,ExpressionSet,ebarraysFamily,ebarraysPatterns-method, emfit,matrix,character,ebarraysPatterns-method, emfit,matrix,ebarraysFamily,ebarraysPatterns-method, show,ebarraysEMfit-method
● 0 images

postprob (Package: EBarrays) : Calculates posterior probabilities for expression patterns

Takes the output from emfit and calculates the posterior probability of each of the hypotheses, for each gene.

● Data Source: BioConductor
● Keywords: models
● Alias: ebarraysPostProb-class, postprob, postprob,ebarraysEMfit,ExpressionSet-method, postprob,ebarraysEMfit,matrix-method, show,ebarraysPostProb-method
● 0 images

utilities (Package: EBarrays) : Utility functions for the EBarrays package

Utilitiy functions for the EBarrays package

● Data Source: BioConductor
● Keywords: models
● Alias: ebPatterns, ebarraysPatterns-class, show,ebarraysPatterns-method, utilities
● 0 images