R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
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Results 1 - 7 of 7 found.
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MAFfilter (Package: GGBase) :

Filter genotype contents of an smlSet according to certain SNP allele frequency features.

● Data Source: BioConductor
● Keywords: models
● Alias: GTFfilter, MAFfilter, dropMonomorphies
● 0 images

clipPCs (Package: GGBase) :

transformations of expression data in smlSet instances or assay data in SummarizedExperiment

● Data Source: BioConductor
● Keywords: models
● Alias: clipPCs, clipPCs,RangedSummarizedExperiment,numeric,logical-method, clipPCs,RangedSummarizedExperiment,numeric,missing-method, clipPCs,SummarizedExperiment,numeric,logical-method, clipPCs,SummarizedExperiment,numeric,missing-method, clipPCs,smlSet,numeric,logical-method, clipPCs,smlSet,numeric,missing-method, regressOut
● 0 images

externalize (Package: GGBase) :

create a package with a decomposed smlSet instance from a unified smlSet instance, to reduce memory footprints

● Data Source: BioConductor
● Keywords: models
● Alias: allsnps, externalize
● 0 images

make_smlSet (Package: GGBase) :

construct an smlSet instance from existing resources, either using ExpressionSet and SnpMatrix instances, or a suitably structured package

● Data Source: BioConductor
● Keywords: models
● Alias: getSS, make_smlSet
● 0 images

plot_EvG (Package: GGBase) :

display the association between expression values and genotypes in an smlSet instance

● Data Source: BioConductor
● Keywords: models
● Alias: plot_EvG, plot_EvG,genesym,rsid,smlSet-method, plot_EvG,probeId,rsid,smlSet-method
● 1 images

rsid-class (Package: GGBase) : Class code{"rsid"

rsid(), probeId(), and genesym() are basic casting methods that assign a type to a token.

● Data Source: BioConductor
● Keywords: classes
● Alias: casting, genesym, genesym,character-method, genesym-class, probeId, probeId,character-method, probeId-class, rsid, rsid,character-method, rsid,numeric-method, rsid-class
● 0 images

smlSet-class (Package: GGBase) : Class code{"smlSet"

Integrative container for expression plus genotype data. Genotypes are stored in an efficient format defined in the snpStats package.

● Data Source: BioConductor
● Keywords: classes
● Alias: [,smlSet,ANY,ANY,ANY-method, combine,smlSet,smlSet-method, exprs,smlSet-method, nsFilter,smlSet-method, permEx, permEx,smlSet-method, smList, smList,smlSet-method, smlSet-class
● 0 images