R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Functions
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Classification

Results 1 - 10 of 16 found.
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ChrNumeric (Package: GLAD) : Convert chromosome into numeric values

Convert chromosome into numeric values.

● Data Source: BioConductor
● Keywords: manip
● Alias: ChrNumeric
● 0 images

ColorBar (Package: GLAD) : Calibration bar for color images

This function produces a color image (color bar) which can be used for the legend to another color image obtained from the functions image or arrayPlot.

● Data Source: BioConductor
● Keywords: hplot
● Alias: ColorBar
● 2 images

GLAD-internal (Package: GLAD) : GLAD-internal

Internal functions

● Data Source: BioConductor
● Keywords: internal
● Alias: BkpInfo, BkpInfo.profileCGH, CheckData, CheckData.profileCGH, DelRegionTooSmall, FDRThres, GLAD-internal, HaarSeg, HaarSegGLAD, HaarSegGLADCPP, MoveBkp, MoveBkp.profileCGH, MoveBkpStep, MoveBkpStep.profileCGH, OptimBkpFindCluster, OutliersGNL, OutliersGNL.profileCGH, RecomputeGNL, SegmentByPeaks, affectationGNL, affectationGNL.profileCGH, chrBreakpoints, chrBreakpoints.profileCGH, cluster, clusterglad, clusterglad.hclust, detectOutliers, detectOutliers.profileChr, dogenomestep, filterBkp, filterBkp.profileCGH, filterBkpStep, filterBkpStep.profileCGH, findCluster, findCluster.profileChr, lawsglad, loopRemove, loopRemove.profileChr, plotCytoBand, plotCytoBand.default, prepare.output.daglad, removeBreakpoints, removeBreakpoints.profileChr, removeLevel, removeLevel.profileChr, selectindex, testBkpToMove, testBkpToMove.profileCGH
● 0 images

arrayCGH (Package: GLAD) : Object of Class arrayCGH

Description of the object arrayCGH.

● Data Source: BioConductor
● Keywords: classes
● Alias: arrayCGH
● 0 images

arrayPersp (Package: GLAD) : Perspective image of microarray spots statistic

The function arrayPersp creates perspective images of shades of gray or colors that correspond to the values of a statistic for each spot on the array. The statistic can be the intensity log-ratio, a spot quality measure (e.g. spot size or shape), or a test statistic. This function can be used to explore whether there are any spatial effects in the data, for example, print-tip or cover-slip effects.

● Data Source: BioConductor
● Keywords: hplot
● Alias: arrayPersp, arrayPersp.arrayCGH, arrayPersp.default
● 0 images

arrayPlot (Package: GLAD) : Spatial image of microarray spots statistic

The function arrayPlot creates spatial images of shades of gray or colors that correspond to the values of a statistic for each spot on the array. The statistic can be the intensity log-ratio, a spot quality measure (e.g. spot size or shape), or a test statistic. This function can be used to explore whether there are any spatial effects in the data, for example, print-tip or cover-slip effects.

● Data Source: BioConductor
● Keywords: hplot
● Alias: arrayPlot, arrayPlot.arrayCGH, arrayPlot.default
● 1 images

as.data.frame.profileCGH (Package: GLAD) : profileCGH consercion

Convert a profileCGH object into a data.frame.

● Data Source: BioConductor
● Keywords: manip
● Alias: as.data.frame.profileCGH
● 0 images

as.profileCGH (Package: GLAD) : Create an object of class profileCGH

Create an object of class profileCGH.

● Data Source: BioConductor
● Keywords: manip
● Alias: as.profileCGH, as.profileCGH.data.frame
● 0 images

daglad (Package: GLAD) : Analysis of array CGH data

This function allows the detection of breakpoints in genomic profiles obtained by array CGH technology and affects a status (gain, normal or lost) to each clone.

● Data Source: BioConductor
● Keywords: models
● Alias: daglad, daglad.profileCGH
● 2 images

glad (Package: GLAD) : Analysis of array CGH data

This function allows the detection of breakpoints in genomic profiles obtained by array CGH technology and affects a status (gain, normal or lost) to each clone.

● Data Source: BioConductor
● Keywords: models
● Alias: glad, glad.profileCGH
● 2 images