R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
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Results 1 - 10 of 22 found.
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CopyNumberBreakPointGenes-class (Package: GeneBreak) : An S4 class to represent a CopyNumberBreakPointGenes object

An S4 class to represent a CopyNumberBreakPointGenes object

● Data Source: BioConductor
● Keywords:
● Alias: CopyNumberBreakPointGenes, CopyNumberBreakPointGenes-class
● 1 images

CopyNumberBreakPoints-class (Package: GeneBreak) : An S4 class to represent a CopyNumberBreakPoints object.

An S4 class to represent a CopyNumberBreakPoints object.

● Data Source: BioConductor
● Keywords:
● Alias: CopyNumberBreakPoints, CopyNumberBreakPoints-class
● 1 images

GeneBreak (Package: GeneBreak) : GeneBreak: A package for gene breakpoint detection on copy number abberation data

The GeneBreak package performs cohort based recurrent gene breakpoint detection on copynumber data. It is possible to use the output of the function CGHcall from the package CGHcall or the function callBins from the package QDNAseq as the input for this analysis.

● Data Source: BioConductor
● Keywords:
● Alias: GeneBreak, GeneBreak-package
● 0 images

accessOptions,CopyNumberBreakPoints-method (Package: GeneBreak) : Access Object Data. This method lists possible functions to access the data of the object.

Access Object Data. This method lists possible functions to access the data of the object.

● Data Source: BioConductor
● Keywords:
● Alias: accessOptions, accessOptions,CopyNumberBreakPoints-method
● 0 images

addGeneAnnotation,CopyNumberBreakPoints-method (Package: GeneBreak) : addGeneAnnotation

Maps features to gene locations.

● Data Source: BioConductor
● Keywords:
● Alias: addGeneAnnotation, addGeneAnnotation,CopyNumberBreakPoints-method
● 0 images

bpFilter,CopyNumberBreakPoints-method (Package: GeneBreak) : bpFilter

Selects breakpoints by filter criteria options.

● Data Source: BioConductor
● Keywords:
● Alias: bpFilter, bpFilter,CopyNumberBreakPoints-method
● 0 images

bpGenes,CopyNumberBreakPointGenes-method (Package: GeneBreak) : bpGenes

Indentifies genes affected by breakpoint locations.

● Data Source: BioConductor
● Keywords:
● Alias: bpGenes, bpGenes,CopyNumberBreakPointGenes-method
● 0 images

bpPlot,CopyNumberBreakPoints-method (Package: GeneBreak) : bpPlot

Plots breakpoint frequencies per chromosome

● Data Source: BioConductor
● Keywords:
● Alias: bpPlot, bpPlot,CopyNumberBreakPoints-method
● 1 images

bpStats,CopyNumberBreakPoints-method (Package: GeneBreak) : bpStats

Applies cohort-based statistics to identify genes and/or chromosomal locations that are recurrently affected by breakpoints.

● Data Source: BioConductor
● Keywords:
● Alias: bpStats, bpStats,CopyNumberBreakPoints-method
● 0 images

breakpointData,CopyNumberBreakPoints-method (Package: GeneBreak) : Access Object breakpointData. This method returns a dataframe with breakpoint values per feature.

Access Object breakpointData. This method returns a dataframe with breakpoint values per feature.

● Data Source: BioConductor
● Keywords:
● Alias: breakpointData, breakpointData,CopyNumberBreakPoints-method
● 0 images