show.simdata
(Package: Geneland) :
Graphical display of data simulated by simdata
Graphical display of data simulated by simdata
● Data Source:
CranContrib
● Keywords:
● Alias: show.simdata
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Fstat.output
(Package: Geneland) :
Computes F statistics on the output of an inference by MCMC simulation
Computes F statistics according to Weir and Cockerham's estimators. Missing values are allowed but as of today, the NA code is only treated as an extra allele which might bias the result. This function should not be used on haploid data.
● Data Source:
CranContrib
● Keywords:
● Alias: Fstat.output
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Plotnpop
(Package: Geneland) :
Plot of number of populations along the MCMC run
Gives a plot of the number of populations along the MCMC run
● Data Source:
CranContrib
● Keywords:
● Alias: Plotnpop
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PostProcessChain
(Package: Geneland) :
Computation for maps of posterior probability of population membership
Computes posterior probabilities of population membership for each pixel of the spatial domain.
● Data Source:
CranContrib
● Keywords:
● Alias: PostProcessChain
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PlotFreq
(Package: Geneland) :
Plot the trace of allele frequencies in present time population
Plot of allele frequencies in present time populations number ipop, for allele iall of locus iloc
● Data Source:
CranContrib
● Keywords:
● Alias: PlotFreq
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PlotTessDyn
(Package: Geneland) :
Plot tessellation along an MCMC run.
Plot sequence of tessellations simulated along an MCMC run.
● Data Source:
CranContrib
● Keywords:
● Alias: PlotTessDyn
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MCMC
(Package: Geneland) :
Markov Chain Monte-Carlo inference of clusters from genotpype data
Markov Chain Monte-Carlo inference of clusters from genotpype data
● Data Source:
CranContrib
● Keywords:
● Alias: MCMC
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Plotntile
(Package: Geneland) :
Plot of number of tiles along the MCMC run
Plot of number of tiles in the Poisson-Voronoi tessellation along the MCMC run
● Data Source:
CranContrib
● Keywords:
● Alias: Plotntile
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PosteriorMode
(Package: Geneland) :
Map of mode of posterior distribution of population membership
Plots a map giving the modal population as a color code for each pixel.
● Data Source:
CranContrib
● Keywords:
● Alias: PosteriorMode
●
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Fstat
(Package: Geneland) :
Computes F statistics on a population genetics dataset given as R
Computes F statistics according to Weir and Cockerham's estimators. Missing values are allowed and accounting for in the computation of Fst. The presence of missing values involves a downward bias in the computation of Fis. This function should not be used on haploid data.
● Data Source:
CranContrib
● Keywords:
● Alias: Fstat
●
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