R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 10 of 40 found.
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GenoGAM-class (Package: GenoGAM) : GenoGAM class

This class is designed to represent the model object containing the estimate parameters, arguments and finals fits of the model on a basepair level.

● Data Source: BioConductor
● Keywords:
● Alias: GenoGAM-class
● 0 images

view,GenoGAM-method (Package: GenoGAM) : View the dataset

Cbinding the columns all together and coercing to data.frame

● Data Source: BioConductor
● Keywords:
● Alias: view,GenoGAM-method
● 0 images

GenoGAM (Package: GenoGAM) : GenoGAM: A package providing a framework to analyse ChIP-Seq data

GenoGAM: A package providing a framework to analyse ChIP-Seq data

● Data Source: BioConductor
● Keywords:
● Alias: GenoGAM
● 0 images

GenoGAMDataSet-class (Package: GenoGAM) : GenoGAMDataSet

This class is designed to represent the input for the GenoGAM model. it extends the GenomicTiles class.

● Data Source: BioConductor
● Keywords:
● Alias: GenoGAMDataSet-class
● 0 images

GenoGAMDataSet (Package: GenoGAM) : GenoGAMDataSet constructor.

This is the constructor function for GenoGAMDataSet. So far a GenoGAMDataSet can be constructed from either an experiment design file or data.frame or directly from a RangedSummarizedExperiment with a GPos object being the rowRanges.

● Data Source: BioConductor
● Keywords:
● Alias: GenoGAMDataSet
● 0 images

GenoGAMDataSetToDataFrame (Package: GenoGAM) : GenoGAMDataSet to DataFrame

GenoGAMDataSet to DataFrame

● Data Source: BioConductor
● Keywords:
● Alias: GenoGAMDataSetToDataFrame
● 0 images

GenoGAMSettings-class (Package: GenoGAM) : GenoGAMSettings

This class is designed to store settings for the computation of the GenoGAM package

● Data Source: BioConductor
● Keywords:
● Alias: GenoGAMSettings-class
● 0 images

GenoGAMSettings (Package: GenoGAM) : The constructor function for GenoGAMSettings

The constructor function for GenoGAMSettings

● Data Source: BioConductor
● Keywords:
● Alias: GenoGAMSettings
● 0 images

[[,GenomicTiles,numeric,ANY-method (Package: GenoGAM) : Providing pseudo-list functionality

Getting a specific tile

● Data Source: BioConductor
● Keywords:
● Alias: [,GenomicTiles,GRanges,ANY,ANY-method, [[,GenomicTiles,numeric,ANY-method
● 0 images

GenomicTiles-class (Package: GenoGAM) : GenomicTiles class

This class is designed to represent the entire genome (or a subset of it) and any additional data associated with the samples or positions. It extends the RangedSummarizedExperiment class and adds two additional index slots to keep track of the data. The main change compared to RangedSummarizedExperiment is the use of a GPos (basepair level) instead of GRanges (ranges level) object as rowRanges and the use of two GRanges objects as indices. The GPos object allows to store raw instead of summarized data in the assays. Because of this the size of genomic data can increase tremendously. Thus the GenomicTiles class automatically divides the data in (overlapping) tiles, making any operation on this data easy executable in parallel.

● Data Source: BioConductor
● Keywords:
● Alias: GenomicTiles-class
● 0 images