DisplayPars
(Package: GenomeGraphs) :
DisplayPars constructs objects of type DisplayPars which are used
DisplayPars takes any number of named arguments which will be used by the drawGD method of the gdObject. These arguments are analagous to both par and gp of the traditional and grid graphics systems respectively. Different functions support different graphical parameters - thus it is necessary to consult the documentation of the particular gdObject to determine which DisplayPars will be used.
ExonArray-class
(Package: GenomeGraphs) :
Class "ExonArray" representing probe level exon array data from Affymetrix
Represents probe level exon array data from Affymetrix. Makes it possible to visualize alternative splicing as measured by the Affymetrix exon array platform and relate it to known transcript isoforms annotated by Ensembl
Gene-class
(Package: GenomeGraphs) :
Class "Gene" represents the Ensembl Gene level annotation
Class "Gene" represents the Ensembl Gene level annotation. Upon creation of an object of this class, intron and exon boundaries are retrieved from Ensembl
This class represents a custom gene model defined by exon boundaries. An example of this class could be an Affymetrix gene model used to create the Affy Exon array
The Generic Array class is a class that can be used to create plots from array data such as microarrays and arrayCGH platforms. It can represent, the data as line plots or dot plots and segments can be included as well