The GTuples class is a container for the genomic tuples and their associated annotations.
● Data Source:
BioConductor
● Keywords:
● Alias: GTuples, GTuples-class, class:GTuples
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Methods for comparing and ordering the elements in one or more GTuples objects.
● Data Source:
BioConductor
● Keywords: methods
● Alias: GTuples-comparison
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The GTuplesList class is a container for storing a collection of GTuples objects. It is derived from GRangesList.
● Data Source:
BioConductor
● Keywords:
● Alias: GTuplesList, GTuplesList-class, class:GTuplesList
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GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.
● Data Source:
BioConductor
● Keywords:
● Alias: GenomicTuples-package
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Finds tuple overlaps between a GTuples or GTuplesList object, and another object containing tuples or ranges.
● Data Source:
BioConductor
● Keywords: methods, utilities
● Alias: findOverlaps-methods
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These are methods defined for GRanges and GRangesList objects that have no well-defined equivalent for GTuples or GTuplesList. Therefore, I have explicitly written methods for these that return errors when called.
● Data Source:
BioConductor
● Keywords:
● Alias: replaceROWS,NULL-method
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intra-tuple-methods
(Package: GenomicTuples) :
Intra-tuple transformations of a GTuples or GTuplesLists object
This man page documents intra-tuple transformations of a GTuples or a GTuplesList object.
● Data Source:
BioConductor
● Keywords: methods, utilities
● Alias: intra-tuple-methods
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nearest-methods
(Package: GenomicTuples) :
Finding the nearest genomic tuple/range neighbor
The nearest, precede, follow, distance and distanceToNearest methods for GTuples objects and subclasses.
● Data Source:
BioConductor
● Keywords: utilities
● Alias: nearest-methods
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tuples-squeezers
(Package: GenomicTuples) :
Squeeze the tuples out of a tuples-based object
S4 generic functions for squeezing the tuples out of a tuples-based object. Similar to the S4 generic functions for squeezing the ranges out of a ranged-based object, see granges and grglist.
● Data Source:
BioConductor
● Keywords: methods
● Alias: tuples-squeezers
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